Tag: general commands


Select the reference for distance-based masks activeref <#> Set which reference structure should be used when setting up distance-based masks for everything but the mask action. Numbering starts from 0, so ’activeref 0’ selects the first reference structure… Read More


Clear various objects from the CPPTRAJ state clear [{all | <type>}] <type> = actions, trajin, trajout, ref, parm, analysis, datafile, dataset Clear list of indicated type, or all lists if ’all’ specified. Note that when clearing actions or… Read More


Provide help for commands help {[<command>] | General | Action | Analysis | Topology | Trajectory} By itself, list all commands known to CPPTRAJ. If given with a command, print help for that command. Otherwise, list all commands… Read More