Start here

CPPTRAJ introductory information to perform analysis

Learn More

CPPTRAJ description of actions, file formats and commands.

Learn More
CPPTRAJ cookbook

Collection of CPPTRAJ recipes and one-liners to perform analysis

Learn More
AMBER examples

Selected AMBER tutorials to perform molecular dynamics simulations

Learn More

Official AMBER

The official website for AMBER and AMBER-tools is located at
This website provides scripts, examples and tutorials based on day to day work form hard-core users of all the AMBER codes and programs.  Please consider that this website is based on examples used in day to day research from a small comunity of people and should be regarded as starting points for personal research. We strive to expand the use of the AMBER programs and utilities and hence, support their use, although, we encourage common-sense in the examples provided here and erncourage that the users double check their results in orer to obtain meaningful results.